ggmsa: Plot Multiple Sequence Alignment using 'ggplot2'

Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.

Version: 0.0.2
Depends: R (≥ 3.5.0)
Imports: Biostrings, ggplot2, ggseqlogo, magrittr, tidyr, treeio, utils
Suggests: ape, cowplot, ggtree, knitr, methods, prettydoc, rmarkdown, seqmagick
Published: 2020-01-08
Author: Guangchuang Yu ORCID iD [aut, cre], Lang Zhou [aut], Huina Huang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu at>
License: Artistic-2.0
NeedsCompilation: no
Materials: NEWS
CRAN checks: ggmsa results


Reference manual: ggmsa.pdf
Vignettes: ggmsa
Package source: ggmsa_0.0.2.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: ggmsa_0.0.2.tgz, r-oldrel: ggmsa_0.0.2.tgz
Old sources: ggmsa archive


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