ToxicoGx: Analysis of Large-Scale Toxico-Genomic Data

Contains a set of functions to perform large-scale analysis of toxico-genomic data. A member of the BHK lab's Gx suite of software, this package provides a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxico-genomic data. This package is in early release, and more features will be added over the next few months.

Version: 0.1.1
Depends: R (≥ 3.5.0), CoreGx
Imports: SummarizedExperiment, Biobase, RColorBrewer, ggplot2, data.table, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, scales
Suggests: testthat (≥ 2.1.0), rmarkdown, knitr, tinytex, knitcitations, devtools, PharmacoGx, xtable
Published: 2020-01-20
Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at>
License: MIT + file LICENSE
NeedsCompilation: no
Materials: README NEWS
CRAN checks: ToxicoGx results


Reference manual: ToxicoGx.pdf
Vignettes: %\VignetteEngine{knitr::rmarkdown}ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis
Package source: ToxicoGx_0.1.1.tar.gz
Windows binaries: r-devel:, r-devel-gcc8:, r-release:, r-oldrel:
OS X binaries: r-release: not available, r-oldrel: not available
Old sources: ToxicoGx archive


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