Contains a set of functions to perform large-scale analysis of toxico-genomic data. A member of the BHK lab's Gx suite of software, this package provides a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxico-genomic data. This package is in early release, and more features will be added over the next few months.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0), CoreGx |
| Imports: | SummarizedExperiment, Biobase, RColorBrewer, ggplot2, data.table, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, scales |
| Suggests: | testthat (≥ 2.1.0), rmarkdown, knitr, tinytex, knitcitations, devtools, PharmacoGx, xtable |
| Published: | 2020-01-20 |
| Author: | Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Benjamin Haibe-Kains [aut, cre] |
| Maintainer: | Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca> |
| License: | MIT + file LICENSE |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | ToxicoGx results |
| Reference manual: | ToxicoGx.pdf |
| Vignettes: |
%\VignetteEngine{knitr::rmarkdown}ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis |
| Package source: | ToxicoGx_0.1.1.tar.gz |
| Windows binaries: | r-devel: ToxicoGx_0.1.1.zip, r-devel-gcc8: ToxicoGx_0.1.0.zip, r-release: ToxicoGx_0.1.1.zip, r-oldrel: ToxicoGx_0.1.0.zip |
| OS X binaries: | r-release: not available, r-oldrel: not available |
| Old sources: | ToxicoGx archive |
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