Methods and feature set definitions for feature or gene set enrichment analysis in transcriptional and metabolic profiling data. Package includes tests for enrichment based on ranked lists of features, functions for visualisation and multivariate functional analysis.

Documentation

Manual: tmod.pdf
Vignette: Transcriptional Modules Enrichment Analysis

Maintainer: January Weiner <january.weiner at gmail.com>

Author(s): January Weiner

Install package and any missing dependencies by running this line in your R console:

install.packages("tmod")

Depends R (>= 2.10)
Imports beeswarm, pca3d, tagcloud, XML, methods, plotwidgets
Suggests limma, org.Hs.eg.db, testthat, knitr
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Package tmod
Materials
URL http://bioinfo.mpiib-berlin.mpg.de/tmod/
Task Views
Version 0.31
Published 2016-09-08
License GPL (>= 2.0)
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NeedsCompilation no
Citation
CRAN checks tmod check results
Package source tmod_0.31.tar.gz