Infers the V genotype of an individual from immunoglobulin (Ig) repertoire-sequencing (Rep-Seq) data, including detection of any novel alleles. This information is then used to correct existing V allele calls from among the sample sequences.

Documentation

Manual: tigger.pdf
Vignette: Polymorphism detection and genotyping

Maintainer: Daniel Gadala-Maria <daniel.gadala-maria at yale.edu>

Author(s): Daniel Gadala-Maria*, Jason Vander Heiden*, Steven Kleinstein*

Install package and any missing dependencies by running this line in your R console:

install.packages("tigger")

Depends R (>= 3.2.5), ggplot2(>=2.0.0)
Imports alakazam(>=0.2.1), tidyr, dplyr(>=0.5.0), doParallel, foreach, graphics, grid, iterators, parallel, stats
Suggests knitr, testthat
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Package tigger
Materials
URL http://tigger.readthedocs.io
Task Views
Version 0.2.8
Published 2016-08-28
License CC BY-NC-SA 4.0
BugReports https://bitbucket.org/kleinstein/tigger/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks tigger check results
Package source tigger_0.2.8.tar.gz