Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.

Documentation

Manual: taxonomizr.pdf
Vignette: taxonomizr usage

Maintainer: Scott Sherrill-Mix <shescott at upenn.edu>

Author(s): Scott Sherrill-Mix*

Install package and any missing dependencies by running this line in your R console:

install.packages("taxonomizr")

Depends R (>= 3.0.0)
Imports parallel, RSQLite, data.table, R.utils
Suggests testthat, knitr, rmarkdown
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Package taxonomizr
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Version 0.2.2
Published 2017-03-09
License GPL-2
BugReports
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks taxonomizr check results
Package source taxonomizr_0.2.2.tar.gz