Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.

Maintainer: Scott Chamberlain <myrmecocystus at gmail.com>

Author(s): Scott Chamberlain*, Eduard Szoecs*, Zachary Foster*, Carl Boettiger*, Karthik Ram*, Ignasi Bartomeus*, John Baumgartner*, James O'Donnell*, Jari Oksanen*

Install package and any missing dependencies by running this line in your R console:

install.packages("taxize")

Depends R(>= 3.2.1)
Imports graphics, methods, stats, utils, httr(>=1.2.1), xml2(>=1.0.0), jsonlite, reshape2, stringr, plyr, foreach, ape, bold(>=0.3.5), data.table, rredlist(>=0.1.0), rotl(>=3.0.0), ritis(>=0.5.0), tibble(>=1.2), worrms(>=0.1.0), natserv(>=0.1.4)
Suggests testthat, knitr, vegan, covr
Enhances
Linking to
Reverse
depends
aptg, MonoPhy
Reverse
imports
bdvis, brranching, camtrapR, metacoder, myTAI, originr, RNeXML, rusda, taxlist, TR8, traits
Reverse
suggests
binomen, mapr, rbison, rnoaa, spocc
Reverse
enhances
rerddap
Reverse
linking to

Package taxize
Materials
URL https://github.com/ropensci/taxize
Task Views Phylogenetics
Version 0.8.4
Published 2017-01-19
License MIT + file LICENSE
BugReports https://github.com/ropensci/taxize/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks taxize check results
Package source taxize_0.8.4.tar.gz