Data structures and methods for manipulating output of genetic population structure clustering algorithms. 'starmie' can parse output from 'STRUCTURE' (see for details) or 'ADMIXTURE' (see for details). 'starmie' performs model selection via information criterion, and provides functions for MCMC diagnostics, correcting label switching and visualisation of admixture coefficients.

Documentation

Manual: starmie.pdf
Vignettes:

Maintainer: Stuart Lee <lee.s at wehi.edu.au>

Author(s): Gerry Tonkin-Hill*, Stuart Lee*

Install package and any missing dependencies by running this line in your R console:

install.packages("starmie")

Depends R (>= 3.3.0)
Imports data.table, readr(>=1.0.0), stringr, tidyr, purrr, ggplot2(>=2.1.0), iterpc, combinat, label.switching, proxy, MCL, gridExtra, ggdendro, ggrepel, MCMCpack, parallel, methods, stats
Suggests testthat, knitr, rmarkdown
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Package starmie
Materials
URL https://github.com/sa-lee/starmie
Task Views
Version 0.1.2
Published 2016-11-07
License MIT + file LICENSE
BugReports https://github.com/sa-lee/starmie/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks starmie check results
Package source starmie_0.1.2.tar.gz