Infrastructure for seriation with an implementation of several seriation/sequencing techniques to reorder matrices, dissimilarity matrices, and dendrograms. Also provides (optimally) reordered heatmaps, color images and clustering visualizations like dissimilarity plots, and visual assessment of cluster tendency plots (VAT and iVAT).

Maintainer: Michael Hahsler <mhahsler at lyle.smu.edu>

Author(s): Michael Hahsler*, Christian Buchta*, Kurt Hornik*, Fionn Murtagh*, Michael Brusco*, Stephanie Stahl*, Hans-Friedrich Koehn*

Install package and any missing dependencies by running this line in your R console:

install.packages("seriation")

Depends R (>= 2.14.0)
Imports TSP, qap, grid, cluster, gclus, dendextend, colorspace, MASS, gplots, registry, methods, stats, grDevices
Suggests biclust, testthat, DendSer, GA
Enhances
Linking to
Reverse
depends
ClusteredMutations, DendSer, mpMap
Reverse
imports
arulesViz, corrgram, corrr, DeLorean, heatmaply, matie, mbgraphic, pergola, qlcVisualize
Reverse
suggests
ChemoSpec, corrplot, dendextend, dendsort, disclapmix, flexclust, ockc, SFS
Reverse
enhances
relations
Reverse
linking to

Package seriation
Materials
URL http://lyle.smu.edu/IDA/seriation
Task Views Cluster , Graphics , Multivariate
Version 1.2-2
Published 2017-05-09
License GPL-3
BugReports https://github.com/mhahsler/seriation
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks seriation check results
Package source seriation_1.2-2.tar.gz