A coalescent simulator that allows the rapid simulation of biological sequences under neutral models of evolution. Different to other coalescent based simulations, it has an optional approximation parameter that allows for high accuracy while maintaining a linear run time cost for long sequences. It is optimized for simulating massive data sets as produced by Next- Generation Sequencing technologies for up to several thousand sequences.

Documentation

Manual: scrm.pdf
Vignettes:

Maintainer: Paul Staab <develop at paulstaab.de>

Author(s): Paul Staab*, Zhu Sha*, Dirk Metzler*, Gerton Lunter*

Install package and any missing dependencies by running this line in your R console:

install.packages("scrm")

Depends R (>= 3.1.0)
Imports Rcpp(>=0.11.2)
Suggests ape, knitr, rmarkdown, testthat(>=0.9.0)
Enhances
Linking to Rcpp
Reverse
depends
Reverse
imports
coala
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package scrm
Materials
URL https://github.com/scrm/scrm-r
Task Views
Version 1.7.2-0
Published 2016-12-11
License GPL (>= 3)
BugReports https://github.com/scrm/scrm-r/issues
SystemRequirements C++11
NeedsCompilation yes
Citation
CRAN checks scrm check results
Package source scrm_1.7.2-0.tar.gz