A programmatic interface to various 'SNP' 'datasets' on the web: 'OpenSNP' (), 'NBCIs' 'dbSNP' database (), and Broad Institute 'SNP' Annotation and Proxy Search (). Functions are included for searching for 'SNPs' for the Broad Institute and 'NCBI'. For 'OpenSNP', functions are included for getting 'SNPs', and data for 'genotypes', 'phenotypes', annotations, and bulk downloads of data by user.

Documentation

Manual: rsnps.pdf
Vignette: rsnps tutorial

Maintainer: Scott Chamberlain <myrmecocystus at gmail.com>

Author(s): Scott Chamberlain*, Kevin Ushey*, Hao Zhu*

Install package and any missing dependencies by running this line in your R console:

install.packages("rsnps")

Depends
Imports plyr, stringr, httr(>=1.2.0), XML, jsonlite
Suggests roxygen2(>=5.0.1), testthat, knitr, covr
Enhances
Linking to
Reverse
depends
Reverse
imports
Reverse
suggests
solarius
Reverse
enhances
Reverse
linking to

Package rsnps
Materials
URL https://github.com/ropensci/rsnps
Task Views
Version 0.2.0
Published 2016-11-20
License MIT + file LICENSE
BugReports https://github.com/ropensci/rsnps/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks rsnps check results
Package source rsnps_0.2.0.tar.gz