An interface to the 'Open Tree of Life' API to retrieve phylogenetic trees, information about studies used to assemble the synthetic tree, and utilities to match taxonomic names to 'Open Tree identifiers'. The 'Open Tree of Life' aims at assembling a comprehensive phylogenetic tree for all named species.

Maintainer: Francois Michonneau <francois.michonneau at gmail.com>

Author(s): Francois Michonneau*, Joseph Brown*, David Winter*

Install package and any missing dependencies by running this line in your R console:

install.packages("rotl")

Depends R (>= 3.1.1)
Imports httr, jsonlite, assertthat(>=0.1), rncl(>=0.6.0), ape, rentrez
Suggests knitr(>=1.12), rmarkdown(>=0.7), testthat, RNeXML, phylobase, MCMCglmm, fulltext(>=0.1.6), readxl
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Package rotl
Materials
URL https://github.com/ropensci/rotl
Task Views Phylogenetics
Version 3.0.3
Published 2017-03-04
License BSD_2_clause + file LICENSE
BugReports https://github.com/ropensci/rotl/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks rotl check results
Package source rotl_3.0.3.tar.gz