An interface to the Nexus Class Library which allows parsing of NEXUS, Newick and other phylogenetic tree file formats. It provides elements of the file that can be used to build phylogenetic objects such as ape's 'phylo' or phylobase's 'phylo4(d)'. This functionality is demonstrated with 'read_newick_phylo()' and 'read_nexus_phylo()'.

Documentation

Manual: rncl.pdf
Vignette: None available.

Maintainer: Francois Michonneau <francois.michonneau at gmail.com>

Author(s): Francois Michonneau*, Ben Bolker*, Mark Holder*, Paul Lewis*, Brian O'Meara*

Install package and any missing dependencies by running this line in your R console:

install.packages("rncl")

Depends R (>= 3.1.1)
Imports Rcpp(>=0.11.0), progress(>=1.1.2), stats
Suggests testthat, ape
Enhances
Linking to Rcpp, progress
Reverse
depends
Reverse
imports
phylobase, rotl
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package rncl
Materials
URL https://github.com/fmichonneau/rncl
Task Views Phylogenetics
Version 0.8.2
Published 2016-12-16
License BSD_2_clause + file LICENSE
BugReports https://github.com/fmichonneau/rncl/issues
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks rncl check results
Package source rncl_0.8.2.tar.gz