Population genetic analyses for hierarchical analysis of partially clonal populations built upon the architecture of the 'adegenet' package.

Maintainer: Zhian N. Kamvar <zkamvar at gmail.com>

Author(s): Zhian N. Kamvar*, Javier F. Tabima*, Sydney E. Everhart*, Jonah C. Brooks*, Stacy A. Krueger-Hadfield*, Erik Sotka*, Brian J. Knaus*, Niklaus J. Grunwald*

Install package and any missing dependencies by running this line in your R console:

install.packages("poppr")

Depends R (>= 2.15.1), adegenet(>=2.0.0)
Imports stats, graphics, grDevices, utils, vegan, ggplot2, phangorn, ape(>=3.1-1), igraph, methods, ade4, pegas, reshape2, dplyr(>=0.4), boot, shiny, magrittr
Suggests testthat, knitr, rmarkdown, knitcitations, polysat, poweRlaw, cowplot
Enhances
Linking to
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depends
popprxl
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vcfR
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linking to

Package poppr
Materials
URL http://github.com/grunwaldlab/poppr http://grunwaldlab.github.io/Population_Genetics_in_R/ http://grunwaldlab.cgrb.oregonstate.edu/poppr-r-package-population-genetics
Task Views
Version 2.3.0
Published 2016-11-23
License GPL-2 | GPL-3
BugReports https://github.com/grunwaldlab/poppr/issues
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks poppr check results
Package source poppr_2.3.0.tar.gz