Provides functions for fitting phylogenetic linear models and phylogenetic generalized linear models. The computation uses an algorithm that is linear in the number of tips in the tree. The package also provides functions for simulating continuous or binary traits along the tree. Other tools include functions to test the adequacy of a population tree.

Documentation

Manual: phylolm.pdf
Vignette: None available.

Maintainer: Lam Si Tung Ho <lamho86 at gmail.com>

Author(s): Lam Si Tung Ho*, Cecile Ane*, Robert Lachlan*, Kelsey Tarpinian*, Rachel Feldman*, Qing Yu*

Install package and any missing dependencies by running this line in your R console:

install.packages("phylolm")

Depends R (>= 3.0), ape
Imports
Suggests testthat
Enhances
Linking to
Reverse
depends
sensiPhy
Reverse
imports
phylocurve, Rphylopars
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package phylolm
Materials
URL https://CRAN.R-project.org/package=phylolm
Task Views Phylogenetics
Version 2.5
Published 2016-10-17
License GPL (>= 2) | file LICENSE
BugReports
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks phylolm check results
Package source phylolm_2.5.tar.gz