Provides functions for parsing Thermo MSF files produced by Proteome Discoverer 1.4.x (see for more information). This package makes it easy to view individual peptide information, including peak areas, and to map peptides to locations within the parent protein sequence. This package also estimates protein abundances from peak areas and across multiple technical replicates. The author of this package is not affiliated with ThermoFisher Scientific in any way.

Documentation

Manual: parsemsf.pdf
Vignette: Introduction to ParseMSF

Maintainer: Benjamin Jack <benjamin.r.jack at gmail.com>

Author(s): Benjamin Jack*

Install package and any missing dependencies by running this line in your R console:

install.packages("parsemsf")

Depends R (>= 3.2.4)
Imports dplyr(>=0.5.0), lazyeval, RSQLite(>=1.0.0), stats, stringr(>=1.1.0), tidyr(>=0.6.0)
Suggests testthat(>=1.0.2), knitr, rmarkdown, ggplot2
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Package parsemsf
Materials
URL https://github.com/benjaminjack/parsemsf/
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Version 0.1.0
Published 2017-01-24
License GPL-2
BugReports https://github.com/benjaminjack/parsemsf/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks parsemsf check results
Package source parsemsf_0.1.0.tar.gz