Performs QTL mapping analysis for balanced and for multi-environment and multi-trait analysis using mixed models. Balanced population, single trait, single environment QTL mapping is performed through marker-regression (Haley and Knott (1992) , Martinez and Curnow (1992) , while multi-environment and multi-trait QTL mapping is performed through linear mixed models. These functions could use any of the following populations: double haploid, F2, recombinant inbred lines, back-cross, and 4-way crosses. Performs a Single Marker Analysis, a Single Interval Mapping, or a Composite Interval Mapping analysis, and then constructs a final model with all of the relevant QTL.

Documentation

Manual: lmem.qtler.pdf
Vignette: Vignette Title

Maintainer: Gaston Quero <gastonquero at gmail.com>

Author(s): Lucia Gutierrez*, Gaston Quero*, Schubert Fernandez*, Sofia Brandariz*, Sebastian Simondi*

Install package and any missing dependencies by running this line in your R console:

install.packages("lmem.qtler")

Depends R (>= 2.10)
Imports qtl, lme4, lattice, pastecs, stringr, graphics, utils, grDevices, stats
Suggests knitr, rmarkdown, testthat
Enhances
Linking to
Reverse
depends
Reverse
imports
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package lmem.qtler
Materials
URL
Task Views
Version 0.1.1
Published 2016-07-12
License GPL-3
BugReports
SystemRequirements
NeedsCompilation no
Citation
CRAN checks lmem.qtler check results
Package source lmem.qtler_0.1.1.tar.gz