Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON () toolkit for outbreak analysis.

Documentation

Manual: incidence.pdf
Vignettes:

Maintainer: Thibaut Jombart <thibautjombart at gmail.com>

Author(s): Thibaut Jombart*, Rich FitzJohn*, Jun Cai*

Install package and any missing dependencies by running this line in your R console:

install.packages("incidence")

Depends
Imports ggplot2, ISOweek
Suggests outbreaks, testthat, covr, knitr, rmarkdown, scales
Enhances
Linking to
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Package incidence
Materials
URL http://www.repidemicsconsortium.org/incidence/
Task Views
Version 1.1.1
Published 2017-02-15
License MIT + file LICENSE
BugReports http://github.com/reconhub/incidence/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks incidence check results
Package source incidence_1.1.1.tar.gz