Sets up and executes a HiSSE model (Hidden State Speciation and Extinction) on a phylogeny and character sets to test for hidden shifts in trait dependent rates of diversification.

Documentation

Manual: hisse.pdf
Vignette: Running hisse

Maintainer: Jeremy Beaulieu <jbeaulieu at nimbios.org>

Author(s): Jeremy M. Beaulieu <jbeaulieu at nimbios.org>, Brian O'Meara <bomeara at utk.edu>

Install package and any missing dependencies by running this line in your R console:

install.packages("hisse")

Depends ape, deSolve, GenSA, subplex, nloptr
Imports parallel, phytools, data.table, methods
Suggests testthat, diversitree, knitr
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Package hisse
Materials
URL
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Version 1.8.2
Published 2017-04-04
License GPL (>= 2)
BugReports
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks hisse check results
Package source hisse_1.8.2.tar.gz