Function to identify haplotypes within QTL (Quantitative Trait Loci). One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL. This function groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, haplotyper groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, haplotyper calculates such probability from relative frequencies.

Documentation

Manual: haplotyper.pdf
Vignette: Use haplotyper

Maintainer: Gaston Quero <gastonquero at gmail.com>

Author(s): Sebastian Simondi <sebastian.simondi at gmail.com> and Gaston Quero, with contributions from Victoria Bonnecarrere and Lucia Gutierrez

Install package and any missing dependencies by running this line in your R console:

install.packages("haplotyper")

Depends R (>= 2.10)
Imports graphics, utils
Suggests knitr, rmarkdown, testthat
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Package haplotyper
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Version 0.1
Published 2016-04-06
License GPL-3
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NeedsCompilation no
Citation
CRAN checks haplotyper check results
Package source haplotyper_0.1.tar.gz