Pipeline to read and analyze raw SNP array data. The data is preprocessed and normalized. Genotypes and CNVs are called. Synteny blocks are calculated and translocations detected. The results can be plotted with special functions.

Documentation

Manual: gsrc.pdf
Vignettes:

Maintainer: Fabian Grandke <grafabian at gmail.com>

Author(s): Fabian Grandke*, Birgit Samans*

Install package and any missing dependencies by running this line in your R console:

install.packages("gsrc")

Depends
Imports illuminaio, limma, preprocessCore, R6, utils, grDevices, graphics, dbscan, Ckmeans.1d.dp, DNAcopy, openxlsx
Suggests testthat, knitr, rmarkdown, brassicaData, mixtools, devtools, KernSmooth
Enhances
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Package gsrc
Materials
URL http://github.com/grafab/gsrc
Task Views
Version 1.1
Published 2016-10-17
License GPL-3
BugReports http://github.com/grafab/gsrc/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks gsrc check results
Package source gsrc_1.1.tar.gz