This is a simple package for Flux Balance Analysis and related metabolic modelling techniques. Functions are provided for: parsing models in tabular format, converting parsed metabolic models to input formats for common linear programming solvers, and evaluating and applying gene-protein-reaction mappings. In addition, there are wrappers to parse a model, select a solver, find the metabolic fluxes, and return the results applied to the original model. Compared to other packages in this field, this package puts a much heavier focus on providing reusable components that can be used in the design of new implementation of new techniques, in particular those that involve large parameter sweeps.

Maintainer: Max Conway <conway.max1 at gmail.com>

Author(s): Max Conway*

Install package and any missing dependencies by running this line in your R console:

install.packages("fbar")

Depends R (>= 3.0.0)
Imports assertthat, Matrix, dplyr, tidyr, purrr, tibble, stringr, magrittr, ROI
Suggests knitr, rmarkdown, testthat, tidyverse, Rglpk, ROI.plugin.ecos, ROI.plugin.glpk
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Package fbar
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Version 0.1.23
Published 2017-01-14
License GPL-3
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NeedsCompilation no
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Package source fbar_0.1.23.tar.gz