A method which uses the Cochran-Mantel-Haenszel test with significant pattern mining to detect intervals in binary genotype data which are significantly associated with a particular phenotype, while accounting for categorical covariates.

Documentation

Manual: fastcmh.pdf
Vignette: None available.

Maintainer: Dean Bodenham <deanbodenhambsse at gmail.com>

Author(s): Felipe Llinares Lopez, Dean Bodenham

Install package and any missing dependencies by running this line in your R console:

install.packages("fastcmh")

Depends R (>= 3.3.0), bindata
Imports Rcpp
Suggests testthat
Enhances
Linking to Rcpp
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depends
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Package fastcmh
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Version 0.2.7
Published 2016-09-13
License GPL-2 | GPL-3
BugReports
SystemRequirements C++11
NeedsCompilation yes
Citation
CRAN checks fastcmh check results
Package source fastcmh_0.2.7.tar.gz