Offers a set of functions for extending 'dendrogram' objects in R, letting you visualize and compare trees of 'hierarchical clusterings'. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different 'dendrograms' to one another.

Maintainer: Tal Galili <tal.galili at gmail.com>

Author(s): Tal Galili* (https://www.r-statistics.com), Gavin Simpson*, Gregory Jefferis* (imported code from his dendroextras package), Marco Gallotta* (a.k.a: marcog), Johan Renaudie* (https://github.com/plannapus), The R Core Team* (Thanks for the Infastructure, and code in the examples), Kurt Hornik*, Uwe Ligges*, Andrej-Nikolai Spiess*, Steve Horvath*, Peter Langfelder*, skullkey*, Mark Van Der Loo* (https://github.com/markvanderloo d3dendrogram), Andrie de Vries* (ggdendro author), Zuguang Gu* (circlize author), Cath* (https://github.com/CathG), Yoav Benjamini*

Install package and any missing dependencies by running this line in your R console:

install.packages("dendextend")

Depends R (>= 3.0.0)
Imports utils, stats, datasets, magrittr(>=1.0.1), ggplot2, fpc, whisker, viridis
Suggests knitr, rmarkdown, testthat, seriation, colorspace, plyr, ape, profdpm, microbenchmark, gplots, NMF, heatmaply, d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, circlize(>=0.2.5), covr
Enhances ggdendro, labeltodendro, dendroextras, Hmisc, data.table, rpart
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depends
EnsCat
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imports
BiBitR, CINNA, d3heatmap, factoextra, heatmaply, MiRAnorm, neatmaps, seriation
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suggests
circlize, CluMix, dbscan, pergola, plotly, Rnightlights
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Package dendextend
Materials
URL https://cran.r-project.org/package=dendextend https://github.com/talgalili/dendextend/ https://www.r-statistics.com/tag/dendextend/ https://bioinformatics.oxfordjournals.org/content/31/22/3718
Task Views Cluster , Phylogenetics
Version 1.5.2
Published 2017-03-28
License GPL-2 | GPL-3
BugReports https://github.com/talgalili/dendextend/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks dendextend check results
Package source dendextend_1.5.2.tar.gz