Core Hunter is a tool to sample diverse, representative subsets from large germplasm collections, with minimum redundancy. Such so-called core collections have applications in plant breeding and genetic resource management in general. Core Hunter can construct cores based on genetic marker data, phenotypic traits or precomputed distance matrices, optimizing one of many provided evaluation measures depending on the precise purpose of the core (e.g. high diversity, representativeness, or allelic richness). In addition, multiple measures can be simultaneously optimized as part of a weighted index to bring the different perspectives closer together. The Core Hunter library is implemented in Java 8 as an open source project (see ).

Documentation

Manual: corehunter.pdf
Vignette: None available.

Maintainer: Herman De Beukelaer <herman.debeukelaer at gmail.com>

Author(s): Herman De Beukelaer*, Guy Davenport*, Veerle Fack*

Install package and any missing dependencies by running this line in your R console:

install.packages("corehunter")

Depends R (>= 3.2.3), rJava(>=0.9-8)
Imports naturalsort(>=0.1.2), methods
Suggests testthat, StatMatch
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Package corehunter
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Version 3.1.0
Published 2017-02-20
License MIT + file LICENSE
BugReports
SystemRequirements Java JRE 8 or higher
NeedsCompilation no
Citation
CRAN checks corehunter check results
Package source corehunter_3.1.0.tar.gz