Coalescent simulators can rapidly simulate biological sequences evolving according to a given model of evolution. You can use this package to specify such models, to conduct the simulations and to calculate additional statistics from the results. It relies on existing simulators for doing the simulation, and currently supports the programs 'ms', 'msms' and 'scrm'. It also supports finite-sites mutation models by combining the simulators with the program 'seq-gen'.

Maintainer: Paul Staab <develop at paulstaab.de>

Author(s): Paul Staab*, Dirk Metzler*, Jorge E. Amaya Romero*

Install package and any missing dependencies by running this line in your R console:

install.packages("coala")

Depends R (>= 3.1.0)
Imports assertthat(>=0.1), digest, methods, parallel, R6(>=2.0.1), Rcpp(>=0.11.0), rehh(>=2.0.0), scrm(>=1.6.0-2), stats, utils
Suggests abc(>=2.0), knitr, PopGenome(>=2.1.0), phyclust(>=0.1-16), rmarkdown, testthat(>=0.11.0)
Enhances
Linking to Rcpp, RcppArmadillo(>=0.3.810.0)
Reverse
depends
Reverse
imports
Reverse
suggests
jaatha
Reverse
enhances
Reverse
linking to

Package coala
Materials
URL https://github.com/statgenlmu/coala
Task Views
Version 0.5.0
Published 2016-12-29
License MIT + file LICENSE
BugReports https://github.com/statgenlmu/coala/issues
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks coala check results
Package source coala_0.5.0.tar.gz