One haplotype is a combination of SNP (Single Nucleotide Polymorphisms) within the QTL (Quantitative Trait Loci). clusterhap groups together all individuals of a population with the same haplotype. Each group contains individual with the same allele in each SNP, whether or not missing data. Thus, clusterhap groups individuals, that to be imputed, have a non-zero probability of having the same alleles in the entire sequence of SNP's. Moreover, clusterhap calculates such probability from relative frequencies.

Documentation

Manual: clusterhap.pdf
Vignette: Use clusterhap

Maintainer: Gaston Quero <gastonquero at gmail.com>

Author(s): Gaston Quero <gastonquero at gmail.com> and Sebastian Simondi <sebastian.simondi at gmail.com> , with contributions from Victoria Bonnecarrere and Lucia Gutierrez

Install package and any missing dependencies by running this line in your R console:

install.packages("clusterhap")

Depends R (>= 2.10)
Imports graphics, utils
Suggests knitr, rmarkdown, testthat
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Package clusterhap
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Version 0.1
Published 2016-05-16
License GPL-3
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NeedsCompilation no
Citation
CRAN checks clusterhap check results
Package source clusterhap_0.1.tar.gz