A programmatic interface to the Web Service methods provided by Bold Systems for genetic 'barcode' data. Functions include methods for searching by sequences by taxonomic names, ids, collectors, and institutions; as well as a function for searching for specimens, and downloading trace files.

Documentation

Manual: bold.pdf
Vignette: bold vignette

Maintainer: Scott Chamberlain <myrmecocystus at gmail.com>

Author(s): Scott Chamberlain*

Install package and any missing dependencies by running this line in your R console:

install.packages("bold")

Depends
Imports methods, utils, stats, xml2, httr, stringr, assertthat, jsonlite, reshape, plyr, data.table, tibble
Suggests sangerseqR, knitr, testthat, covr
Enhances
Linking to
Reverse
depends
Reverse
imports
taxize
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package bold
Materials
URL https://github.com/ropensci/bold
Task Views
Version 0.4.0
Published 2017-01-06
License MIT + file LICENSE
BugReports https://github.com/ropensci/bold/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks bold check results
Package source bold_0.4.0.tar.gz