Tools for extraction and analysis of various n-grams (k-mers) derived from biological sequences (proteins or nucleic acids). Contains QuiPT (quick permutation test) for fast feature-filtering of the n-gram data.

Documentation

Manual: biogram.pdf
Vignette: biogram package - an overview

Maintainer: Michal Burdukiewicz <michalburdukiewicz at gmail.com>

Author(s): Michal Burdukiewicz*, Piotr Sobczyk*, Chris Lauber*

Install package and any missing dependencies by running this line in your R console:

install.packages("biogram")

Depends R (>= 3.0.0), slam
Imports bit, combinat, entropy, partitions
Suggests ggplot2, knitr, testthat
Enhances
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AmyloGram
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Package biogram
Materials
URL https://github.com/michbur/biogram
Task Views
Version 1.4
Published 2017-01-06
License GPL-3
BugReports https://github.com/michbur/biogram/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks biogram check results
Package source biogram_1.4.tar.gz