R class to access 'sqlite', 'BiblioSpec' generated, mass spectrometry search result files, containing detailed information about peptide spectra matches. Convert 'Mascot' '.dat' or e.g. 'comet' '.pep.xml' files with 'BiblioSpec' into 'sqlite' files and than access them with the 'CRAN' 'bibliospec' package to analyse with the R-packages 'specL' to generate spectra libraries, 'protViz' to annotate spectra, or 'prozor' for false discovery rate estimation and protein inference.

Documentation

Manual: bibliospec.pdf
Vignette: None available.

Maintainer: Witold E. Wolski <wew at fgcz.ethz.ch>

Author(s): Christian Panse <cp at fgcz.ethz.ch>, Witold E. Wolski <wew at fgcz.ethz.ch>

Install package and any missing dependencies by running this line in your R console:

install.packages("bibliospec")

Depends R (>= 3.2), methods, DBI, RSQLite
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Package bibliospec
Materials
URL https://github.com/protViz/bibliospec
Task Views
Version 0.0.4
Published 2016-07-01
License GPL-3
BugReports https://github.com/protViz/bibliospec/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks bibliospec check results
Package source bibliospec_0.0.4.tar.gz