Provides immunoglobulin (Ig) sequence lineage reconstruction, diversity profiling, and amino acid property analysis.

Maintainer: Jason Vander Heiden <jason.vanderheiden at yale.edu>

Author(s): Jason Vander Heiden*, Namita Gupta*, Susanna Marquez*, Daniel Gadala-Maria*, Roy Jiang*, Steven Kleinstein*

Install package and any missing dependencies by running this line in your R console:

install.packages("alakazam")

Depends R (>= 3.1.2), ggplot2(>=2.0.0)
Imports dplyr(>=0.5.0), graphics, grid, igraph(>=1.0.0), lazyeval, methods, progress, Rcpp(>=0.12.11), readr, scales, seqinr, stats, stringi, utils
Suggests knitr, rmarkdown, testthat
Enhances
Linking to Rcpp
Reverse
depends
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imports
shazam, tigger
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suggests
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linking to

Package alakazam
Materials
URL http://alakazam.readthedocs.org
Task Views
Version 0.2.7
Published 2017-06-15
License CC BY-SA 4.0
BugReports https://bitbucket.org/kleinstein/alakazam/issues
SystemRequirements C++11
NeedsCompilation yes
Citation
CRAN checks alakazam check results
Package source alakazam_0.2.7.tar.gz