Implements tools for building and visualising admixture graphs and for extracting equations from them. These equations can be compared to f- statistics obtained from data to test the consistency of a graph against data -- for example by comparing the sign of f_4-statistics with the signs predicted by the graph -- and graph parameters (edge lengths and admixture proportions) can be fitted to observed statistics.

Maintainer: Thomas Mailund <mailund at birc.au.dk>

Author(s): Thomas Mailund*, Kalle Leppala*, Svend Nielsen*

Install package and any missing dependencies by running this line in your R console:

install.packages("admixturegraph")

Depends R (>= 3.2.2)
Imports doParallel, dplyr, foreach, ggplot2, graphics, MASS, methods, neldermead, parallel, pracma, stats, utils, grDevices
Suggests knitr, rmarkdown, testthat
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Package admixturegraph
Materials
URL https://github.com/mailund/admixture_graph
Task Views
Version 1.0.2
Published 2016-12-13
License GPL-2
BugReports https://github.com/mailund/admixture_graph/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks admixturegraph check results
Package source admixturegraph_1.0.2.tar.gz