In putative Transcription Factor Binding Sites (TFBSs) identification from sequence/alignments, we are interested in the significance of certain match score. TFMPvalue provides the accurate calculation of P-value with score threshold for Position Weight Matrices, or the score with given P-value. This package is an interface to code originally made available by Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.

Documentation

Manual: TFMPvalue.pdf
Vignette: None available.

Maintainer: Ge Tan <ge.tan09 at imperial.ac.uk>

Author(s): Ge Tan <ge.tan09 at imperial.ac.uk>

Install package and any missing dependencies by running this line in your R console:

install.packages("TFMPvalue")

Depends R (>= 3.0.1)
Imports Rcpp(>=0.11.1)
Suggests testthat
Enhances
Linking to Rcpp
Reverse
depends
Reverse
imports
Reverse
suggests
Reverse
enhances
Reverse
linking to

Package TFMPvalue
Materials
URL https://github.com/ge11232002/TFMPvalue
Task Views
Version 0.0.6
Published 2015-11-29
License GPL-2
BugReports https://github.com/ge11232002/TFMPvalue/issues
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks TFMPvalue check results
Package source TFMPvalue_0.0.6.tar.gz