Characterizing environmental microbiota diversity using amplicon-based next generation sequencing (NGS) data. Functions are developed to manipulate operational taxonomic unit (OTU) table, perform descriptive and inferential statistics, and generate publication-quality plots.

Documentation

Manual: RAM.pdf
Vignette: None available.

Maintainer: Wen Chen <Wen.Chen at agr.gc.ca>

Author(s): Wen Chen, Joshua Simpson, C. Andre Levesque

Install package and any missing dependencies by running this line in your R console:

install.packages("RAM")

Depends vegan, ggplot2, stats
Imports RColorBrewer, gplots, plyr, reshape2, scales, labdsv, grid, gridExtra, ggmap, permute, VennDiagram, data.table, FD, MASS, RgoogleMaps, lattice, reshape, ade4, phangorn, phytools, utils, graphics, grDevices, ape
Suggests testthat, mapproj, gtable, indicspecies, Heatplus
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Package RAM
Materials
URL http://cran.r-project.org/package=RAM https://bitbucket.org/Wen_Chen/ram_releases/src/
Task Views
Version 1.2.1.3
Published 2016-01-02
License MIT + file LICENSE
BugReports https://bitbucket.org/Wen_Chen/ram_releases/issues/
SystemRequirements
NeedsCompilation no
Citation
CRAN checks RAM check results
Package source RAM_1.2.1.3.tar.gz