An implementation of the data processing and data analysis portion of a pipeline named the PepSAVI-MS which is currently under development by the Hicks laboratory at the University of North Carolina. The statistical analysis package presented herein provides a collection of software tools used to facilitate the prioritization of putative bioactive peptides from a complex biological matrix. Tools are provided to deconvolute mass spectrometry features into a single representation for each peptide charge state, filter compounds to include only those possibly contributing to the observed bioactivity, and prioritize these remaining compounds for those most likely contributing to each bioactivity data set.

Maintainer: Pritchard David <dpritch at live.unc.edu>

Author(s): Pritchard David*, Kirkpatrick Christine*

Install package and any missing dependencies by running this line in your R console:

install.packages("PepSAVIms")

Depends R (>= 3.0.0)
Imports elasticnet
Suggests testthat, knitr
Enhances
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Package PepSAVIms
Materials
URL https://github.com/dpritchLibre/PepSAVIms
Task Views
Version 0.9.1
Published 2016-12-17
License CC BY-NC-SA 4.0
BugReports https://github.com/dpritchLibre/PepSAVIms/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks PepSAVIms check results
Package source PepSAVIms_0.9.1.tar.gz