Generates Proteomics (PTX) quality control (QC) reports for shotgun LC-MS data analyzed with the MaxQuant software suite (see ). Reports are customizable (target thresholds, subsetting) and available in HTML or PDF format. Published in J. Proteome Res., Proteomics Quality Control: Quality Control Software for MaxQuant Results (2015) .

Maintainer: Chris Bielow <chris.bielow at mdc-berlin.de>

Author(s): Chris Bielow <chris.bielow at mdc-berlin.de>

Install package and any missing dependencies by running this line in your R console:

install.packages("PTXQC")

Depends R (>= 3.0.0)
Imports data.table, ggplot2, ggdendro, graphics, grid, gridExtra, grDevices, gtable, methods, plyr, proto, RColorBrewer, reshape2, rmarkdown, seqinr, stats, utils, yaml
Suggests knitr(>=1.10), testthat
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Package PTXQC
Materials
URL https://github.com/cbielow/PTXQC
Task Views
Version 0.82.2
Published 2017-02-17
License GPL-2
BugReports https://github.com/cbielow/PTXQC/issues
SystemRequirements pandoc (http://pandoc.org) for building Vignettes and output reports as HTML
NeedsCompilation no
Citation
CRAN checks PTXQC check results
Package source PTXQC_0.82.2.tar.gz