Combined maximum likelihood and Bayesian inference of the univariate Phylogenetic Ornstein-Uhlenbeck Mixed Model; Fast POUMM likelihood calculation. Maximum likelihood inference of the genotypic values at the tips of a phylogeny assuming that the trait has evolved on it according to a POUMM with specified genotypic value at the root. Functions for summarizing and plotting the inference results; Functions for simulation of univariate continuous trait evolution along a phylogenetic tree.

Documentation

Manual: POUMM.pdf
Vignette: A User Guide to The POUMM R-package

Maintainer: Venelin Mitov <vmitov at gmail.com>

Author(s): Venelin Mitov*

Install package and any missing dependencies by running this line in your R console:

install.packages("POUMM")

Depends R (>= 3.1.0), stats, Rcpp, methods
Imports ape, data.table, coda, foreach, ggplot2, gsl, Matrix
Suggests testthat, TreeSim(>=2.2), Rmpfr, mvtnorm, lmtest, knitr, rmarkdown, parallel, doParallel
Enhances
Linking to Rcpp, RcppArmadillo
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Package POUMM
Materials
URL
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Version 1.2.1
Published 2017-03-11
License GPL (>= 3.0)
BugReports
SystemRequirements
NeedsCompilation yes
Citation
CRAN checks POUMM check results
Package source POUMM_1.2.1.tar.gz