Requires rooted resolved phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways.

Documentation

Manual: MonoPhy.pdf
Vignette: MonoPhy Tutorial

Maintainer: Orlando Schwery <oschwery at vols.utk.edu>

Author(s): Orlando Schwery

Install package and any missing dependencies by running this line in your R console:

install.packages("MonoPhy")

Depends ape, phytools, phangorn, RColorBrewer, taxize
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Suggests knitr, testthat, spacodiR, rmarkdown
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Package MonoPhy
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Version 1.2
Published 2016-07-26
License GPL-3
BugReports
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NeedsCompilation no
Citation
CRAN checks MonoPhy check results
Package source MonoPhy_1.2.tar.gz