Implements routines for metagenome sample taxonomy assignments collection, aggregation, and visualization. Accepts the EDGE-formatted output from GOTTCHA/GOTTCHA2, BWA, Kraken, and MetaPhlAn. Produces SVG and PDF heatmap-like plots comparing taxa abundances across projects.

Documentation

Manual: MetaComp.pdf
Vignette: None available.

Maintainer: Pavel Senin <psenin at lanl.gov>

Author(s): Pavel Senin*

Install package and any missing dependencies by running this line in your R console:

install.packages("MetaComp")

Depends R (>= 3.1.0)
Imports reshape2, plyr, dplyr, data.table, ggplot2, Cairo
Suggests testthat
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Package MetaComp
Materials
URL https://github.com/seninp-bioinfo/MetaComp
Task Views
Version 1.0.1
Published 2017-03-02
License GPL-2
BugReports https://github.com/seninp-bioinfo/MetaComp/issues
SystemRequirements
NeedsCompilation no
Citation
CRAN checks MetaComp check results
Package source MetaComp_1.0.1.tar.gz