Learns direct microbe-microbe interaction networks using a Poisson multivariate-normal hierarchical model with an L1 penalized precision matrix. Optimization is carried out using an iterative conditional modes algorithm.

Maintainer: Surojit Biswas <surojitbiswas at g.harvard.edu>

Author(s): Surojit Biswas, Meredith McDonald, Derek S. Lundberg, Jeffery L. Dangl, Vladimir Jojic

Install package and any missing dependencies by running this line in your R console:

install.packages("MInt")

Depends R (>= 3.1.2), glasso(>=1.8), trust(>=0.1-6), MASS(>=7.3-35), testthat(>=0.9.1)
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Package MInt
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Version 1.0.1
Published 2015-05-18
License GPL-2
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Package source MInt_1.0.1.tar.gz