Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).

Maintainer: Nicholas Youngblut <nyoungb2 at gmail.com>

Author(s): Nicholas Youngblut*, Samuel Barnett*

Install package and any missing dependencies by running this line in your R console:

install.packages("HTSSIP")

Depends R (>= 3.1.2)
Imports magrittr(>=1.5), stringr(>=1.0.0), plyr(>=1.8.4), dplyr(>=0.5.0), tidyr(>=0.5.1), ggplot2(>=2.1.0), DESeq2 (>= 1.10.1), phyloseq (>= 1.14.0), coenocliner(>=0.2.2), lazyeval(>=0.2.0)
Suggests testthat, knitr, rmarkdown, doParallel
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Package HTSSIP
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Version 1.1.1
Published 2017-05-23
License GPL-2 | file LICENSE
BugReports
SystemRequirements
NeedsCompilation no
Citation
CRAN checks HTSSIP check results
Package source HTSSIP_1.1.1.tar.gz