Implements a generalized version of the CDH test ( and ) for detecting compound heterozygosity on a genome-wide level, due to usage of generalized linear models it allows flexible analysis of binary and continuous traits with covariates.

Documentation

Manual: CollapsABEL.pdf
Vignette: None available.

Maintainer: Kaiyin Zhong <kindlychung at gmail.com>

Author(s): Kaiyin Zhong, Fan Liu

Install package and any missing dependencies by running this line in your R console:

install.packages("CollapsABEL")

Depends R (>= 3.1.0), rJava(>=0.9-6)
Imports R.utils, RSQLite, biganalytics, bigmemory, collUtils, dplyr, ggplot2, methods, stringr, stats, haplo.stats
Suggests testthat
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Package CollapsABEL
Materials
URL https://bitbucket.org/kindlychung/collapsabel2/overview
Task Views
Version 0.10.11
Published 2016-12-11
License GPL-3
BugReports https://bitbucket.org/kindlychung/collapsabel2/issues
SystemRequirements PLINK2, Java (>= 8.0), mysql
NeedsCompilation no
Citation
CRAN checks CollapsABEL check results
Package source CollapsABEL_0.10.11.tar.gz