A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (http://pngu.mgh.harvard.edu/~purcell/plink/), the whole genome association analysis toolset, without loading the entire file into memory.

Documentation

Manual: BEDMatrix.pdf
Vignette: None available.

Maintainer: Alexander Grueneberg <alexander.grueneberg at googlemail.com>

Author(s): Alexander Grueneberg*, Lian Lian*, Gustavo de los Campos*

Install package and any missing dependencies by running this line in your R console:

install.packages("BEDMatrix")

Depends R (>= 3.0.0)
Imports methods, Rcpp(>=0.12.1)
Suggests data.table, testthat, roxygen2
Enhances
Linking to Rcpp, BH
Reverse
depends
Reverse
imports
Reverse
suggests
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enhances
Reverse
linking to

Package BEDMatrix
Materials
URL https://github.com/QuantGen/BEDMatrix
Task Views
Version 1.3.0
Published 2016-09-28
License MIT + file LICENSE
BugReports https://github.com/QuantGen/BEDMatrix/issues
SystemRequirements C++11
NeedsCompilation yes
Citation
CRAN checks BEDMatrix check results
Package source BEDMatrix_1.3.0.tar.gz