A matrix-like data structure that allows for efficient, convenient, and scalable subsetting of binary genotype/phenotype files generated by PLINK (), the whole genome association analysis toolset, without loading the entire file into memory.

Documentation

Manual: BEDMatrix.pdf
Vignette: None available.

Maintainer: Alexander Grueneberg <alexander.grueneberg at googlemail.com>

Author(s): Alexander Grueneberg*, Lian Lian*, Gustavo de los Campos*

Install package and any missing dependencies by running this line in your R console:

install.packages("BEDMatrix")

Depends R (>= 3.0.0)
Imports methods, Rcpp(>=0.12.1), crochet
Suggests data.table, testthat
Enhances
Linking to Rcpp, BH
Reverse
depends
BGData
Reverse
imports
Reverse
suggests
symDMatrix
Reverse
enhances
Reverse
linking to

Package BEDMatrix
Materials
URL https://github.com/QuantGen/BEDMatrix
Task Views
Version 1.4.0
Published 2017-05-07
License MIT + file LICENSE
BugReports https://github.com/QuantGen/BEDMatrix/issues
SystemRequirements C++11
NeedsCompilation yes
Citation
CRAN checks BEDMatrix check results
Package source BEDMatrix_1.4.0.tar.gz